References

Clarke, Zoe A., and Gary D. Bader. 2024. “MALAT1expression Indicates Cell Quality in Single-Cell RNA Sequencing Data.” http://dx.doi.org/10.1101/2024.07.14.603469.

Ianevski, Aleksandr, Anil K. Giri, and Tero Aittokallio. 2022. “Fully-Automated and Ultra-Fast Cell-Type Identification Using Specific Marker Combinations from Single-Cell Transcriptomic Data.” Nature Communications 13 (1). https://doi.org/10.1038/s41467-022-28803-w.

Ilicic, Tomislav, Jong Kyoung Kim, Aleksandra A. Kolodziejczyk, Frederik Otzen Bagger, Davis James McCarthy, John C. Marioni, and Sarah A. Teichmann. 2016. “Classification of Low Quality Cells from Single-Cell RNA-Seq Data.” Genome Biology 17 (1). https://doi.org/10.1186/s13059-016-0888-1.

Montserrat-Ayuso, Tomàs, and Anna Esteve-Codina. 2024. “High Content of Nuclei-Free Low-Quality Cells in Reference Single-Cell Atlases: A Call for More Stringent Quality Control Using Nuclear Fraction.” BMC Genomics 25 (1). https://doi.org/10.1186/s12864-024-11015-5.